HL_6ZU9_013

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6ZU9|1|2|G|403

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_013 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1491

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZU9|1|2|C|393
6ZU9|1|2|C|394
6ZU9|1|2|U|395
6ZU9|1|2|G|396
6ZU9|1|2|A|397
6ZU9|1|2|G|398
6ZU9|1|2|A|399
6ZU9|1|2|A|400
6ZU9|1|2|A|401
6ZU9|1|2|C|402
6ZU9|1|2|G|403
6ZU9|1|2|G|404

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A