HL_6ZVI_030

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_030 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0599

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVI|1|h|A|1084
6ZVI|1|h|G|1085
6ZVI|1|h|A|1086
6ZVI|1|h|A|1087
6ZVI|1|h|A|1088
6ZVI|1|h|U|1089

Current chains

Chain h

18S rRNA

Nearby chains

Chain E

RPS22A isoform 1

Chain K

RPS26B isoform 1

Chain k

RPS2 isoform 1