HL_6ZVI_042

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_042 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.258

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVI|1|h|G|1778
6ZVI|1|h|U|1779
6ZVI|1|h|G|1780
6ZVI|1|h|A|1781
6ZVI|1|h|A|1782
6ZVI|1|h|C|1783

Current chains

Chain h

18S rRNA

Nearby chains