HL_6ZVJ_026

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6ZVJ|1|2|U|1300, 6ZVJ|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2751

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZVJ|1|2|A|1295
6ZVJ|1|2|U|1296
6ZVJ|1|2|U|1297
6ZVJ|1|2|G|1298
6ZVJ|1|2|A|1299
6ZVJ|1|2|U|1300
6ZVJ|1|2|A|1301
6ZVJ|1|2|G|1302
6ZVJ|1|2|C|1303
6ZVJ|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15