HL_6ZVJ_028

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6ZVJ|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_028 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1351

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZVJ|1|2|G|1366
6ZVJ|1|2|U|1367
6ZVJ|1|2|U|1368
6ZVJ|1|2|A|1369
6ZVJ|1|2|A|1370
6ZVJ|1|2|U|1371
6ZVJ|1|2|U|1372
6ZVJ|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S17