HL_6ZVK_029
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_029 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2251
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|K3|G|1245
6ZVK|1|K3|A|1246
6ZVK|1|K3|C|1247
6ZVK|1|K3|U|1248
6ZVK|1|K3|C|1249
6ZVK|1|K3|A|1250
6ZVK|1|K3|A|1251
6ZVK|1|K3|C|1252
6ZVK|1|K3|A|1253
6ZVK|1|K3|C|1254
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
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