HL_6ZVK_032

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6ZVK|1|K3|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_032 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2215

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZVK|1|K3|G|1366
6ZVK|1|K3|U|1367
6ZVK|1|K3|U|1368
6ZVK|1|K3|A|1369
6ZVK|1|K3|A|1370
6ZVK|1|K3|U|1371
6ZVK|1|K3|U|1372
6ZVK|1|K3|C|1373

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

40S RIBOSOMAL PROTEIN ES17