HL_6ZVK_049

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|G|294, 6ZVK|1|e2|A|295, 6ZVK|1|e2|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_049 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.2309

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZVK|1|e2|C|289
6ZVK|1|e2|U|290
6ZVK|1|e2|U|291
6ZVK|1|e2|G|292
6ZVK|1|e2|G|293
6ZVK|1|e2|G|294
6ZVK|1|e2|A|295
6ZVK|1|e2|A|296
6ZVK|1|e2|U|297
6ZVK|1|e2|G|298

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain F2

eL42

Chain q2

uL15