HL_6ZVK_065

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|U|1596, 6ZVK|1|e2|A|1600, 6ZVK|1|e2|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_065 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1765

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6ZVK|1|e2|A|1593
6ZVK|1|e2|C|1594
6ZVK|1|e2|G|1595
6ZVK|1|e2|U|1596
6ZVK|1|e2|G|1597
6ZVK|1|e2|C|1598
6ZVK|1|e2|A|1599
6ZVK|1|e2|A|1600
6ZVK|1|e2|A|1601
6ZVK|1|e2|U|1602

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain C2

Ribosomal protein L37

Chain H2

uL22