HL_6ZVK_066

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|A|1630, 6ZVK|1|e2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_066 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1595

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZVK|1|e2|G|1627
6ZVK|1|e2|C|1628
6ZVK|1|e2|G|1629
6ZVK|1|e2|A|1630
6ZVK|1|e2|A|1631
6ZVK|1|e2|A|1632
6ZVK|1|e2|G|1633
6ZVK|1|e2|A|1634
6ZVK|1|e2|C|1635

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain C2

Ribosomal protein L37