HL_6ZVK_089
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|2794, 6ZVK|1|e2|G|2796, 6ZVK|1|e2|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_089 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.2377
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6ZVK|1|e2|C|2792
6ZVK|1|e2|G|2793
6ZVK|1|e2|C|2794
6ZVK|1|e2|A|2795
6ZVK|1|e2|G|2796
6ZVK|1|e2|C|2797
6ZVK|1|e2|A|2798
6ZVK|1|e2|G|2799
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain H2
- uL22
- Chain t2
- uL4
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