HL_6ZVK_094

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6ZVK|1|e2|A|3642, 6ZVK|1|e2|A|3643, 6ZVK|1|e2|U|3644, 6ZVK|1|e2|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_094 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1618

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6ZVK|1|e2|U|3639
6ZVK|1|e2|U|3640
6ZVK|1|e2|U|3641
6ZVK|1|e2|A|3642
6ZVK|1|e2|A|3643
6ZVK|1|e2|U|3644
6ZVK|1|e2|U|3645
6ZVK|1|e2|A|3646
6ZVK|1|e2|A|3647
6ZVK|1|e2|A|3648
6ZVK|1|e2|A|3649

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain C2

Ribosomal protein L37