HL_6ZVK_132

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_132 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.1537

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6ZVK|1|e2|U|3796
6ZVK|1|e2|C|3797
6ZVK|1|e2|U|3798
6ZVK|1|e2|A|3799
6ZVK|1|e2|A|3800
6ZVK|1|e2|U|3801
6ZVK|1|e2|U|3802
6ZVK|1|e2|A|3803
6ZVK|1|e2|G|3804

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain k2

eL14