HL_7A01_027

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7A01|1|K3|U|1300, 7A01|1|K3|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.5155

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7A01|1|K3|A|1295
7A01|1|K3|U|1296
7A01|1|K3|U|1297
7A01|1|K3|G|1298
7A01|1|K3|A|1299
7A01|1|K3|U|1300
7A01|1|K3|A|1301
7A01|1|K3|G|1302
7A01|1|K3|C|1303
7A01|1|K3|U|1304

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain A3

ribosomal protein uS19

Chain H3

ribosomal protein uS14

Chain Q3

40S ribosomal protein S27a