HL_7A01_062

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7A01|1|e2|U|1596, 7A01|1|e2|A|1600, 7A01|1|e2|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_062 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.2111

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|A|1593
7A01|1|e2|C|1594
7A01|1|e2|G|1595
7A01|1|e2|U|1596
7A01|1|e2|G|1597
7A01|1|e2|C|1598
7A01|1|e2|A|1599
7A01|1|e2|A|1600
7A01|1|e2|A|1601
7A01|1|e2|U|1602

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain C2

Ribosomal protein L37

Chain H2

uL22