HL_7A01_085

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7A01|1|e2|C|2794, 7A01|1|e2|G|2796, 7A01|1|e2|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_085 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.2291

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7A01|1|e2|C|2792
7A01|1|e2|G|2793
7A01|1|e2|C|2794
7A01|1|e2|A|2795
7A01|1|e2|G|2796
7A01|1|e2|C|2797
7A01|1|e2|A|2798
7A01|1|e2|G|2799

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain C2

Ribosomal protein L37

Chain D2

ribosomal protein eL39

Chain H2

uL22

Chain t2

uL4