3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UCAAACGGUAACG
Length
13 nucleotides
Bulged bases
7A01|1|e2|A|4214, 7A01|1|e2|C|4221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7A01_100 not in the Motif Atlas
Homologous match to HL_8C3A_056
Geometric discrepancy: 0.438
The information below is about HL_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.9
Basepair signature
cWW-tHH-cWW-tHS-F-F-tWW
Number of instances in this motif group
8

Unit IDs

7A01|1|e2|U|4210
7A01|1|e2|C|4211
7A01|1|e2|A|4212
7A01|1|e2|A|4213
7A01|1|e2|A|4214
7A01|1|e2|C|4215
7A01|1|e2|G|4216
7A01|1|e2|G|4217
7A01|1|e2|U|4218
7A01|1|e2|A|4219
7A01|1|e2|A|4220
7A01|1|e2|C|4221
7A01|1|e2|G|4222

Current chains

Chain e2
28S RIBOSOMAL RNA

Nearby chains

Chain 72
eL21
Chain L2
Ribosomal protein L10 (Predicted)
Chain X2
Ribosomal protein L10 (Predicted)
Chain r2
60S ribosomal protein L29

Coloring options:


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