HL_7A01_106

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_106 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2624

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|C|4417
7A01|1|e2|G|4418
7A01|1|e2|U|4419
7A01|1|e2|U|4420
7A01|1|e2|C|4421
7A01|1|e2|A|4422
7A01|1|e2|U|4423
7A01|1|e2|A|4424
7A01|1|e2|G|4425

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain L2

Ribosomal protein L10 (Predicted)

Chain X2

Ribosomal protein L10 (Predicted)