HL_7A01_107

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7A01|1|e2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_107 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.3403

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7A01|1|e2|A|4474
7A01|1|e2|G|4475
7A01|1|e2|C|4476
7A01|1|e2|A|4477
7A01|1|e2|G|4478
7A01|1|e2|A|4479
7A01|1|e2|A|4480
7A01|1|e2|U|4481

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

Uncharacterized protein