HL_7A09_005

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7A09|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.218

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7A09|1|2|G|288
7A09|1|2|G|289
7A09|1|2|U|290
7A09|1|2|G|291
7A09|1|2|A|292
7A09|1|2|C|293
7A09|1|2|U|294
7A09|1|2|C|295

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6