HL_7A09_026

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7A09|1|2|U|1300, 7A09|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.354

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7A09|1|2|A|1295
7A09|1|2|U|1296
7A09|1|2|U|1297
7A09|1|2|G|1298
7A09|1|2|A|1299
7A09|1|2|U|1300
7A09|1|2|A|1301
7A09|1|2|G|1302
7A09|1|2|C|1303
7A09|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15