HL_7A1G_027

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7A1G|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_027 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1095

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7A1G|1|2|G|1188
7A1G|1|2|A|1189
7A1G|1|2|C|1190
7A1G|1|2|U|1191
7A1G|1|2|C|1192
7A1G|1|2|A|1193
7A1G|1|2|A|1194
7A1G|1|2|C|1195
7A1G|1|2|A|1196
7A1G|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain K

40S ribosomal protein S20

Chain M

40S ribosomal protein S29-A