HL_7A1G_028

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7A1G|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2126

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7A1G|1|2|A|1238
7A1G|1|2|U|1239
7A1G|1|2|U|1240
7A1G|1|2|G|1241
7A1G|1|2|A|1242
7A1G|1|2|G|1243
7A1G|1|2|A|1244
7A1G|1|2|G|1245
7A1G|1|2|C|1246
7A1G|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31