HL_7A5F_040

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

7A5F|1|A6|U|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A5F_040 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1419

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7A5F|1|A6|U|658
7A5F|1|A6|U|659
7A5F|1|A6|U|660
7A5F|1|A6|G|661
7A5F|1|A6|G|662
7A5F|1|A6|U|663
7A5F|1|A6|C|664
7A5F|1|A6|C|665
7A5F|1|A6|U|666
7A5F|1|A6|A|667
7A5F|1|A6|G|668

Current chains

Chain A6

12S rRNA

Nearby chains

Chain D6

28S ribosomal protein S5, mitochondrial

Chain i4

mRNA