HL_7A5F_056

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A5F_056 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1893

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7A5F|1|A6|A|1403
7A5F|1|A6|U|1404
7A5F|1|A6|G|1405
7A5F|1|A6|A|1406
7A5F|1|A6|A|1407
7A5F|1|A6|A|1408
7A5F|1|A6|U|1411

Current chains

Chain A6

12S rRNA

Nearby chains

Chain K6

28S ribosomal protein S14, mitochondrial

Chain Z6

28S ribosomal protein S33, mitochondrial