HL_7ABZ_004

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

7ABZ|1|1|U|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_004 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3896

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|G|136
7ABZ|1|1|U|137
7ABZ|1|1|U|138
7ABZ|1|1|U|139
7ABZ|1|1|C|140
7ABZ|1|1|G|141
7ABZ|1|1|A|142
7ABZ|1|1|C|143

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23