HL_7ABZ_060

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7ABZ|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_060 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1988

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ABZ|1|1|U|2404
7ABZ|1|1|G|2405
7ABZ|1|1|A|2406
7ABZ|1|1|A|2407
7ABZ|1|1|U|2408
7ABZ|1|1|G|2409
7ABZ|1|1|G|2410
7ABZ|1|1|A|2411
7ABZ|1|1|A|2412
7ABZ|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15