HL_7ABZ_062

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7ABZ|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_062 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1784

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7ABZ|1|1|U|2528
7ABZ|1|1|G|2529
7ABZ|1|1|A|2530
7ABZ|1|1|A|2531
7ABZ|1|1|G|2532
7ABZ|1|1|U|2533
7ABZ|1|1|A|2534
7ABZ|1|1|G|2535

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36