HL_7ABZ_078

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

7ABZ|1|2|C|330, 7ABZ|1|2|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.2474

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ABZ|1|2|A|320
7ABZ|1|2|A|321
7ABZ|1|2|C|322
7ABZ|1|2|U|323
7ABZ|1|2|G|324
7ABZ|1|2|A|325
7ABZ|1|2|G|326
7ABZ|1|2|A|327
7ABZ|1|2|C|328
7ABZ|1|2|A|329
7ABZ|1|2|C|330
7ABZ|1|2|G|331
7ABZ|1|2|G|332
7ABZ|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20