HL_7ABZ_114

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7ABZ|1|1|U|958, 7ABZ|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_114 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.2671

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7ABZ|1|1|PSU|955
7ABZ|1|1|G|956
7ABZ|1|1|C|957
7ABZ|1|1|U|958
7ABZ|1|1|A|959
7ABZ|1|1|A|960
7ABZ|1|1|C|961
7ABZ|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16