HL_7ACJ_108
3D structure
- PDB id
- 7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of translocated trans-translation complex on E. coli stalled ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(5MU)(PSU)CAAC(PSU)C
- Length
- 9 nucleotides
- Bulged bases
- 7ACJ|1|4|C|346
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ACJ_108 not in the Motif Atlas
- Homologous match to HL_4V8Q_110
- Geometric discrepancy: 0.5397
- The information below is about HL_4V8Q_110
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7ACJ|1|4|G|340
7ACJ|1|4|5MU|341
7ACJ|1|4|PSU|342
7ACJ|1|4|C|343
7ACJ|1|4|A|344
7ACJ|1|4|A|345
7ACJ|1|4|C|346
7ACJ|1|4|PSU|347
7ACJ|1|4|C|348
Current chains
- Chain 4
- transfer-messanger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- SsrA-binding protein
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
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