3D structure

PDB id
7AF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
7AF5|1|1|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AF5_010 not in the Motif Atlas
Homologous match to HL_5J7L_029
Geometric discrepancy: 0.0691
The information below is about HL_5J7L_029
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7AF5|1|1|G|1356
7AF5|1|1|A|1357
7AF5|1|1|U|1358
7AF5|1|1|C|1359
7AF5|1|1|A|1360
7AF5|1|1|G|1361
7AF5|1|1|A|1362
7AF5|1|1|A|1363
7AF5|1|1|U|1364
7AF5|1|1|G|1365
7AF5|1|1|C|1366

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain C
30S ribosomal protein S3
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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