HL_7AFD_010

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

7AFD|1|1|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFD_010 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.0989

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AFD|1|1|G|1356
7AFD|1|1|A|1357
7AFD|1|1|U|1358
7AFD|1|1|C|1359
7AFD|1|1|A|1360
7AFD|1|1|G|1361
7AFD|1|1|A|1362
7AFD|1|1|A|1363
7AFD|1|1|U|1364
7AFD|1|1|G|1365
7AFD|1|1|C|1366

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14