HL_7AFK_001

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

7AFK|1|1|A|968, 7AFK|1|1|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFK_001 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2474

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AFK|1|1|G|963
7AFK|1|1|A|964
7AFK|1|1|U|965
7AFK|1|1|2MG|966
7AFK|1|1|5MC|967
7AFK|1|1|A|968
7AFK|1|1|A|969
7AFK|1|1|C|970
7AFK|1|1|G|971
7AFK|1|1|C|972

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13