HL_7AFL_015

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFL_015 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.2835

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AFL|1|A|C|689
7AFL|1|A|G|690
7AFL|1|A|G|691
7AFL|1|A|U|692
7AFL|1|A|G|693
7AFL|1|A|A|694
7AFL|1|A|A|695
7AFL|1|A|A|696
7AFL|1|A|U|697
7AFL|1|A|G|698

Current chains

Chain A

16SrRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain V

Ribosome-binding factor A