HL_7AJT_005

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

7AJT|1|D2|A|252, 7AJT|1|D2|U|253, 7AJT|1|D2|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_005 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.3108

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7AJT|1|D2|C|251
7AJT|1|D2|A|252
7AJT|1|D2|U|253
7AJT|1|D2|C|254
7AJT|1|D2|U|255
7AJT|1|D2|U|256
7AJT|1|D2|G|257

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JQ

Regulator of rDNA transcription protein 14

Chain UZ

Ribosome biogenesis protein UTP30