HL_7AJT_008

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAACA

Length

7 nucleotides

Bulged bases

7AJT|1|D2|C|430

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_008 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1765

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7AJT|1|D2|U|425
7AJT|1|D2|G|426
7AJT|1|D2|A|427
7AJT|1|D2|A|428
7AJT|1|D2|A|429
7AJT|1|D2|C|430
7AJT|1|D2|A|431

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CB

rRNA 2'-O-methyltransferase fibrillarin

Chain UK

U3 small nucleolar RNA-associated protein 11