HL_7AJT_010

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7AJT|1|D3|U|158, 7AJT|1|D3|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_010 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.4536

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7AJT|1|D3|G|154
7AJT|1|D3|U|155
7AJT|1|D3|A|156
7AJT|1|D3|A|157
7AJT|1|D3|U|158
7AJT|1|D3|U|159
7AJT|1|D3|C|160

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A

Chain JA

RNA cytidine acetyltransferase