HL_7AJT_019

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7AJT|1|D3|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_019 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4453

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7AJT|1|D3|U|450
7AJT|1|D3|A|451
7AJT|1|D3|A|452
7AJT|1|D3|U|453
7AJT|1|D3|U|454
7AJT|1|D3|C|455
7AJT|1|D3|A|456

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DY

40S ribosomal protein S24-A

Chain UT

U3 small nucleolar RNA-associated protein 20