HL_7AJT_022

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGGUGCCA

Length

8 nucleotides

Bulged bases

7AJT|1|D3|U|563, 7AJT|1|D3|G|564, 7AJT|1|D3|C|565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_022 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3428

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7AJT|1|D3|U|560
7AJT|1|D3|G|561
7AJT|1|D3|G|562
7AJT|1|D3|U|563
7AJT|1|D3|G|564
7AJT|1|D3|C|565
7AJT|1|D3|C|566
7AJT|1|D3|A|567

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14

Chain UK

U3 small nucleolar RNA-associated protein 11