HL_7AJU_004

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

7AJU|1|D3|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJU_004 not in the Motif Atlas

Homologous match to HL_4V88_187

Geometric discrepancy: 0.5949

The information below is about HL_4V88_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38701.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7AJU|1|D3|C|70
7AJU|1|D3|A|71
7AJU|1|D3|A|72
7AJU|1|D3|U|73
7AJU|1|D3|U|74
7AJU|1|D3|U|75
7AJU|1|D3|A|76
7AJU|1|D3|U|77
7AJU|1|D3|A|78
7AJU|1|D3|C|79
7AJU|1|D3|A|80
7AJU|1|D3|G|81

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain UT

U3 small nucleolar RNA-associated protein 20