HL_7AJU_014

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7AJU|1|D3|A|452, 7AJU|1|D3|U|454, 7AJU|1|D3|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJU_014 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1676

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7AJU|1|D3|U|450
7AJU|1|D3|A|451
7AJU|1|D3|A|452
7AJU|1|D3|U|453
7AJU|1|D3|U|454
7AJU|1|D3|C|455
7AJU|1|D3|A|456

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DY

40S ribosomal protein S24-A

Chain UT

U3 small nucleolar RNA-associated protein 20