3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUGCC
Length
6 nucleotides
Bulged bases
7AJU|1|D3|U|563
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AJU_017 not in the Motif Atlas
Geometric match to HL_5TBW_006
Geometric discrepancy: 0.1431
The information below is about HL_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

7AJU|1|D3|G|561
7AJU|1|D3|G|562
7AJU|1|D3|U|563
7AJU|1|D3|G|564
7AJU|1|D3|C|565
7AJU|1|D3|C|566

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CJ
U3 small nucleolar ribonucleoprotein protein IMP4
Chain CL
Ribosome biogenesis protein BMS1
Chain UB
Nucleolar complex protein 14
Chain UK
U3 small nucleolar RNA-associated protein 11

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