HL_7AJU_026

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJU_026 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1235

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7AJU|1|D3|A|1084
7AJU|1|D3|G|1085
7AJU|1|D3|A|1086
7AJU|1|D3|A|1087
7AJU|1|D3|A|1088
7AJU|1|D3|U|1089

Current chains

Chain D3

18S rRNA

Nearby chains

Chain D4

U3 small nucleolar RNA; U3 snoRNA

Chain DW

40S ribosomal protein S22-A

Chain UX

rRNA-processing protein FCF1