HL_7AQD_029

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7AQD|1|A|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_029 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.3478

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7AQD|1|A|C|1110
7AQD|1|A|U|1111
7AQD|1|A|U|1112
7AQD|1|A|A|1113
7AQD|1|A|G|1114
7AQD|1|A|A|1115
7AQD|1|A|A|1116
7AQD|1|A|G|1117
7AQD|1|A|C|1118
7AQD|1|A|A|1119
7AQD|1|A|G|1120

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11

Chain R

Rqc2 homolog RqcH