HL_7AQD_037

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUGGAU

Length

9 nucleotides

Bulged bases

7AQD|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_037 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.2661

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7AQD|1|A|G|1497
7AQD|1|A|U|1498
7AQD|1|A|A|1499
7AQD|1|A|U|1500
7AQD|1|A|U|1501
7AQD|1|A|G|1502
7AQD|1|A|G|1503
7AQD|1|A|A|1504
7AQD|1|A|U|1505

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17