HL_7AQD_055

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7AQD|1|A|A|2297, 7AQD|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_055 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1191

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7AQD|1|A|C|2293
7AQD|1|A|U|2294
7AQD|1|A|A|2295
7AQD|1|A|A|2296
7AQD|1|A|A|2297
7AQD|1|A|A|2298
7AQD|1|A|G|2299
7AQD|1|A|G|2300
7AQD|1|A|U|2301
7AQD|1|A|A|2302
7AQD|1|A|A|2303
7AQD|1|A|C|2304
7AQD|1|A|G|2305

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L27