HL_7AQD_059

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_059 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1329

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AQD|1|A|C|2403
7AQD|1|A|G|2404
7AQD|1|A|A|2405
7AQD|1|A|A|2406
7AQD|1|A|A|2407
7AQD|1|A|G|2408

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18