HL_7AS8_025

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_025 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.3262

The information below is about HL_5AOX_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7AS8|1|A|G|759
7AS8|1|A|G|760
7AS8|1|A|U|761
7AS8|1|A|A|762
7AS8|1|A|A|763
7AS8|1|A|C|764
7AS8|1|A|A|765
7AS8|1|A|C|766

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2