3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AS8_036 not in the Motif Atlas
Homologous match to HL_5J7L_167
Geometric discrepancy: 0.1022
The information below is about HL_5J7L_167
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7AS8|1|A|C|1402
7AS8|1|A|G|1403
7AS8|1|A|A|1404
7AS8|1|A|A|1405
7AS8|1|A|A|1406
7AS8|1|A|G|1407

Current chains

Chain A
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L28
Chain h
50S ribosomal protein L34

Coloring options:


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